PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.86
Common NameAMTR_s00009p00148470, LOC18422799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 154aa    MW: 17302.2 Da    PI: 9.0167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.86genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-182575255
                                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                             +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00009.86 25 RYRGVRRRP-WGKYAAEIRDSTR---QgARVWLGTFYTAEEAARAYDRAAYAMRG 75
                                             6********.**********322...24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-162484No hitNo description
SuperFamilySSF541714.51E-232585IPR016177DNA-binding domain
SMARTSM003808.9E-342589IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-312584IPR001471AP2/ERF domain
PfamPF008471.7E-132575IPR001471AP2/ERF domain
PROSITE profilePS5103223.4722583IPR001471AP2/ERF domain
PRINTSPR003672.7E-112637IPR001471AP2/ERF domain
PRINTSPR003672.7E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSPREGKSEE KGGEEKGGKE EEGARYRGVR RRPWGKYAAE IRDSTRQGAR VWLGTFYTAE  60
EAARAYDRAA YAMRGSLAIL NFPHEIPGRY VRSSSLSSSS SCSPRIGGGV DRERGNKRGE  120
SNCEKEVIVL EYLDDRYLDE LLESSEMREK RGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-272286266ATERF1
2gcc_A3e-272286266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827483.11e-105PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLW1NI591e-105W1NI59_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr4P12070_0011e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-22ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]